Vol. 59 No. 3 (2020): 11th IWGTD - Special issue on Grapevine Trunk Diseases
Short Notes - 11th Special issue on Grapevine Trunk Diseases

Metabolite fingerprints of Chardonnay grapevine leaves affected by esca is both clone- and year-dependent: Metabolic fingerprints of esca-affected clones differs

Florian MORET
Agroécologie, AgroSup Dijon, CNRS, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France
Institut Jean-Pierre Bourgin, INRAE, AgroParisTech, CNRS, Université Paris-Saclay, 78000 Versailles, France
Chambre Régionale d’Agriculture de Bourgogne Franche-Comté, 1 rue des Coulots, 21110 Bretenière, France
Agroécologie, AgroSup Dijon, CNRS, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France
Guillaume MORVAN
Chambre d’Agriculture de l’Yonne, 14 Bis Rue Guynemer, 89000 Auxerre, France
Agroécologie, AgroSup Dijon, CNRS, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France
Marielle ADRIAN
Agroécologie, AgroSup Dijon, CNRS, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, F-21000 Dijon, France
SFR Condorcet CNRS 3417, Université de Reims Champagne-Ardenne, Unité Résistance Induite et Bioprotection des Plantes EA4707, Moulin de la Housse, Bâtiment 18, 51687 Reims cedex, France

Published 2020-08-05


  • Vitis vinifera,
  • grapevine trunk diseases,
  • metabolomics,
  • clone

How to Cite

F. MORET, “Metabolite fingerprints of Chardonnay grapevine leaves affected by esca is both clone- and year-dependent: Metabolic fingerprints of esca-affected clones differs”, Phytopathol. Mediterr., vol. 59, no. 3, pp. 595–603, Aug. 2020.


Esca is one of the most widespread grapevine trunk diseases affecting vineyards. This complex disease leads to leaf alterations, wood necrosis and eventually to plant death. Esca symptoms are caused by several fungi inhabiting the xylem of host plants and degrading the wood structure. The main pathogens causing the disease are Phaeomoniella chlamydospora, Phaeoacremonium minimum, Fomitiporia mediterranea and other wood-rotting basidiomycetes. Grapevine susceptibility to esca can be predisposed by several factors, especially climate, vine age, and cultivar. An experiment was carried out (in 2015) to assess if esca expression on leaves could also be clone-dependent. Chardonnay clones 76 and 95 grown in the same plot were compared according to their developmental and physiological traits, metabolome, and foliar symptom expression. Leaves were sampled during summer on visually healthy vines as controls (C), and from asymptomatic (D-) and symptomatic (D+) shoots of esca-affected vines. Analysis of their metabolomes highlighted a clone-dependent metabolite fingerprint associated to esca expression. Opposite variations of specific metabolites were found between C and D+ leaves of both clones. The experiment was repeated (in 2018). Leaf samples could be discriminated, especially the C and D+ samples for each clone, but the differences were less marked than in the first experiment. Discriminant compounds were all different between the two experiments, and showed no opposite variations between C and D+ samples of both clones, which indicated variable metabolite responses from year to year for both clones. These results confirm that the leaf metabolite fingerprint associated to esca expression is clone-dependent, and is year-dependent in intensity and nature.


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Adrian M, Trouvelot S., Gamm M., Poinssot B., Héloir MC, Daire X., 2012. Activation of grapevine defense mechanisms : theoritical and applied approaches. In : Plant Defense : Biological control, Progress in Biological control 12. (JM. Merillon, KG Ramawat, ed.). Springer Science and Business Media B.V.
Andreini L., R. Cardelli, S. Bartolini, G. Scalabrelli, and R. Viti, 2014. “Esca Symptoms Appearance in Vitis vinifera L.: Influence of Climate, Pedo-Climatic Conditions and Rootstock/Cultivar Combination.” Vitis - Journal of Grapevine Research 53 (1): 33–38.
Bettenfeld P., F. Fontaine, S. Trouvelot, O. Fernandez, and P.E. Courty, 2020. “Woody Plant Declines. What's Wrong with the Microbiome ?” Trends in Plant Science, 1–14. https://doi.org/10.1016/j.tplants.2019.12.024.
Chong J., Poutaraud A., and P. Hugueney, 2009. “Metabolism and Roles of Stilbenes in Plants.” Plant Science 177 (3): 143–55. https://doi.org/10.1016/j.plantsci.2009.05.012.
De la Fuente M., F. Fontaine, D. Gramaje, J. Armengol, R. Smart, Z. Nagy, M. Borgo, C. Rego, and M.F. Corio-Costet, 2016. “Grapevine Trunk Diseases. A Review.” International Organisation of Vine and Wine (OIV), no. December: 25 pp. http://www.oiv.int/public/medias/4650/trunk-diseases-oiv-2016.pdf.
Evidente A., B. Punzo, A. Andolfi, A. Cimmino, D. Melck, and J. Luque, 2011. “Lipophilic Phytotoxins Produced by Neofusicoccum parvum, a Grapevine Canker Agent.” Phytopathologia Mediterranea. Firenze University PressMediterranean Phytopathological Union. https://doi.org/10.2307/26458570.
Farquhard G.D., J.R. Ehleringer, and K.T. Hubick, 1989. “Carbon Isotope Discrimination and Photosynthesis.” Plant Physiol. Plant Mol. Biol., no. 40: 503–37. https://doi.org/1040-2519/89/0601-503.
Fischer M., and S. Ashnaei, 2019. “Grapevine, Esca Complex, and Environment: The Disease Triangle.” Phytopathologia Mediterranea 58 (1): 17–37. https://doi.org/10.13128/Phytopathol_Mediterr-25086.
Goodacre R., D. Broadhurst, A. Smilde, B. Kristal, J.D. Baker, R. Beger, C. Bessant, et al., 2007. “Proposed Minimum Reporting Standards for Data Analysis in Metabolomics.” Metabolomics 3 (3): 231–41. https://doi.org/10.1007/s11306-007-0081-3.
Gramaje D., and J. Armengol, 2011. “Fungal Trunk Pathogens in the Grapevine Propagation Process: Potential Inoculum Sources, Detection, Identification, and Management Strategies.” Plant Disease. The American Phytopathological Society . https://doi.org/10.1094/PDIS-01-11-0025.
Gramaje D., and S. Di Marco, 2015. “Identifying Practices Likely to Have Impacts on Grapevine Trunk Disease Infections: A European Nursery Survey.” Phytopathologia Mediterranea 54 (2): 313–24. https://doi.org/10.14601/Phytopathol_Mediterr-16317.
Gramaje D., J.R. Urbez-Torres, and M.R.Sosnowski, 2018. “Managing Grapevine Trunk Diseases with Respect to Etiology and Epidemiology: Current Strategies and Future Prospects.” Plant Disease 102 (1): PDIS-04-17-0512-FE. https://doi.org/10.1094/PDIS-04-17-0512-FE.
Guerin-Dubrana L., F. Fontaine, and L. Mugnai, 2019. “Grapevine Trunk Disease in European and Mediterranean Vineyards: Occurrence, Distribution and Associated Disease-Affecting Cultural Factors.” Phytopathologia Mediterranea 58 (1): 49–71. https://doi.org/10.14601/PHYTOPATHOL_MEDITERR-25153.
Hofstetter V., B. Buyck, D. Croll, O. Viret, A. Couloux, and K. Gindro, 2012. “What If Esca Disease of Grapevine Were Not a Fungal Disease?” Fungal Diversity 54: 51–67. https://doi.org/10.1007/s13225-012-0171-z.
Igamberdiev A., and L. Kleczkowski, 2018. “The Glycerate and Phosphorylated Pathways of Serine Synthesis in Plants: The Branches of Plant Glycolysis Linking Carbon and Nitrogen Metabolism.” Frontiers in Plant Science. Frontiers Media S.A. https://doi.org/10.3389/fpls.2018.00318.
Lecomte P., G. Darrieutort, J. Liminana, G. Comont, A. Muruamendiaraz, F. Legorburu, E. Choueiri, F. Jreijiri, R. El Amil, and M. Fermaud, 2012. “New Insights into Esca of Grapevine: The Development of Foliar Symptoms and Their Association with Xylem Discoloration.” Plant Disease 96 (7): 924–34. https://doi.org/10.1094/PDIS-09-11-0776-RE.
Mondello V., A. Songy, E. Battiston, C. Pinto, C. Coppin, P. Trotel-Aziz, C. Clément, L. Mugnai, and F. Fontaine, 2018. “Grapevine Trunk Diseases: A Review of Fifteen Years of Trials for Their Control with Chemicals and Biocontrol Agents.” Plant Disease In press: 57–60.
Moret F., C. Lemaître-Guillier, C. Grosjean, G. Clément, C. Coelho, J. Negrel, L. Jacquens, et al., 2019. “Clone-Dependent Expression of Esca Disease Revealed by Leaf Metabolite Analysis.” Frontiers in Plant Science 9 (January): 1960. https://doi.org/10.3389/fpls.2018.01960.
Mugnai L., A. Graniti, and G. Surico, 1999. “Esca (Black Measles) and Brown Wood-Streaking: Two Old and Elusive Diseases of Grapevines.” Plant Disease 83 (5): 404–18. https://doi.org/10.1094/PDIS.1999.83.5.404.
Murolo S., and G. Romanazzi, 2014. “Effects of Grapevine Cultivar, Rootstock and Clone on Esca Disease.” Australasian Plant Pathology 43 (2): 215–21. https://doi.org/10.1007/s13313-014-0276-9.
Reis P., R. Pierron, P. Larignon, P. Lecomte, E. Abou-Mansour, S. Farine, C. Bertsch, et al., 2019. “Vitis Methods to Understand and Develop Strategies for Diagnosis and Sustainable Control of Grapevine Trunk Diseases.” Phytopathology 109 (6): 916–31. https://doi.org/10.1094/PHYTO-09-18-0349-RVW.
Schiffman C., L. Petrick, K. Perttula, Y. Yano, H. Carlsson, T. Whitehead, C. Metayer, J. Hayes, S. Rappaport, and S. Dudoit, 2019. “Filtering Procedures for Untargeted Lc-Ms Metabolomics Data.” BMC Bioinformatics 20 (1): 334. https://doi.org/10.1186/s12859-019-2871-9.
Songy A., O. Fernandez, C. Clément, P. Larignon, and F. Fontaine, 2019. “Grapevine Trunk Diseases under Thermal and Water Stresses.” Planta, no. 0123456789. https://doi.org/10.1007/s00425-019-03111-8.
Surico G., 2009. “Towards a Redefinition of the Diseases within the Esca Complex of Grapevine.” Phytopathologia Mediterranea 48 (1): 5–10.
Surico G., L. Mugnai, and G. Marchi, 2006. “Older and More Recent Observations on Esca: A Critical Overview.” Phytopathologia Mediterranea 45 (SUPPL. 1): 68–86. https://doi.org/10.14601/PHYTOPATHOL_MEDITERR-1847.
Van Leeuwen C., O. Tregoat, X. Choné, B. Bois, D. Pernet, and J. Gaudillére, 2009. “Vine Water Status Is a Key Factor in Grape Ripening and Vintage Quality for Red Bordeaux Wine. How Can It Be Assessed for Vineyard Management Purposes?” Journal International Des Sciences de La Vigne et Du Vin 43 (3): 121–34. https://doi.org/10.20870/oeno-one.2009.43.3.798.
Van Niekerk J., W. Bester, F. Halleen, P. Crous, and P. Fourie, 2011. “The Distribution and Symptomatology of Grapevine Trunk Disease Pathogens Are Influenced by Climate.” Phytopathologia Mediterranea. Firenze University PressMediterranean Phytopathological Union. https://doi.org/10.2307/26458714.
Vinaixa M., S. Samino, I. Saez, J. Duran, J. Guinovart, and O. Yanes, 2012. “A Guideline to Univariate Statistical Analysis for LC/MS-Based Untargeted Metabolomics-Derived Data.” Metabolites. MDPI AG. https://doi.org/10.3390/metabo2040775.
Worley B., and R. Powers, 2013. “Multivariate Analysis in Metabolomics.” Current Metabolomics 1 (1): 92–107. https://doi.org/10.2174/2213235x11301010092.